STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB61388.1Hypothetical protein; ATP-dependent DNA helicase. (1281 aa)    
Predicted Functional Partners:
AddA
Putative ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
 
 
 0.985
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
  
 0.841
KXB61389.1
KEGG: lsl:LSL_1369 2.6e-114 sbcC; exonuclease K03546; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.824
TrmK
KEGG: lsl:LSL_0846 2.8e-53 hypothetical protein; K06967 tRNA (adenine22-N1)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
     0.648
KXB62236.1
Polysaccharide biosynthesis protein; KEGG: ssr:SALIVB_0347 4.0e-54 cystathionine gamma-synthase; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.503
KXB57623.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.486
RecJ
single-stranded-DNA-specific exonuclease RecJ; KEGG: sha:SH1285 1.8e-131 hypothetical protein; K07462 single-stranded-DNA-specific exonuclease; Psort location: Cytoplasmic, score: 7.50.
     
 0.479
KXB57951.1
KEGG: bmd:BMD_0076 7.5e-37 tetrapyrrole methylase family protein / MazG family protein K02499; Psort location: Cytoplasmic, score: 7.50.
  
     0.446
DltB
Putative protein DltB; KEGG: bya:BANAU_3754 2.0e-75 dltB; putative poly(beta-D-mannuronate) O-acetylase K03739; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the membrane-bound acyltransferase family.
       0.439
DltA
KEGG: dsy:DSY0221 1.4e-106 D-alanine--poly(phosphoribitol) ligase subunit 1 K03367; Psort location: Cytoplasmic, score: 9.67; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.437
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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