STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB61083.1LPXTG-motif protein cell wall anchor domain protein; KEGG: msp:Mspyr1_22670 3.5e-23 2-oxoglutarate dehydrogenase E2 component K00658; Psort location: Cellwall, score: 9.38. (230 aa)    
Predicted Functional Partners:
KXB57923.1
KEGG: sgo:SGO_0408 5.9e-30 zmpB; zinc metalloproteinase B K08643; Psort location: Cellwall, score: 10.00.
 
 
 0.619
KXB59548.1
Signal peptide protein, YSIRK family; KEGG: isc:IscW_ISCW000348 9.1e-17 secreted mucin MUC17, putative; Psort location: Cellwall, score: 9.39.
 
 
 0.525
KXB59390.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: bta:614562 9.4e-21 CPN2; carboxypeptidase N, polypeptide 2 K13023; Psort location: Cellwall, score: 10.00.
  
 
 0.518
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.496
KXB60117.1
LysM domain protein; KEGG: fin:KQS_00120 4.2e-06 membrane-bound lytic murein transglycosylase precursor; K08307 membrane-bound lytic murein transglycosylase D; Psort location: CytoplasmicMembrane, score: 8.28.
  
 
 0.484
rpsU
Ribosomal protein S21; KEGG: ecf:ECH74115_4377 3.4e-09 rpsU; 30S ribosomal protein S21 K02970; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bS21 family.
 
 
 0.470
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.463
KXB61084.1
DNA-binding regulatory protein, YebC/PmpR family; KEGG: bqy:MUS_0707 3.1e-95 glucose-1-phosphate adenylyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
    0.463
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
  
 
 0.448
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
   
 
 0.448
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.