STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB61085.1RDD family protein; Psort location: CytoplasmicMembrane, score: 9.55. (197 aa)    
Predicted Functional Partners:
KXB61084.1
DNA-binding regulatory protein, YebC/PmpR family; KEGG: bqy:MUS_0707 3.1e-95 glucose-1-phosphate adenylyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.774
KXB57811.1
S4 domain protein; KEGG: fpl:Ferp_1588 2.9e-06 RNA-binding S4 domain protein; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
    0.479
LacR_1
Transcriptional regulator, DeoR family; KEGG: lcb:LCABL_29260 9.0e-25 nadD; Nicotinic acid mononucleotide adenyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.461
KXB61083.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: msp:Mspyr1_22670 3.5e-23 2-oxoglutarate dehydrogenase E2 component K00658; Psort location: Cellwall, score: 9.38.
  
    0.420
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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