Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KXB60269.1 | KXB60270.1 | HMPREF3186_00855 | HMPREF3186_00856 | ACT domain protein; KEGG: mcl:MCCL_1281 8.9e-34 hypothetical protein; K06209 chorismate mutase; Belongs to the UPF0735 family. | 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC02481 5.1e-109 tRNA (uracil-5-) -methyltransferase K03215; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.536 |
| KXB60269.1 | obg | HMPREF3186_00855 | HMPREF3186_00854 | ACT domain protein; KEGG: mcl:MCCL_1281 8.9e-34 hypothetical protein; K06209 chorismate mutase; Belongs to the UPF0735 family. | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.808 |
| KXB60270.1 | KXB60269.1 | HMPREF3186_00856 | HMPREF3186_00855 | 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC02481 5.1e-109 tRNA (uracil-5-) -methyltransferase K03215; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | ACT domain protein; KEGG: mcl:MCCL_1281 8.9e-34 hypothetical protein; K06209 chorismate mutase; Belongs to the UPF0735 family. | 0.536 |
| KXB60270.1 | MetH | HMPREF3186_00856 | HMPREF3186_00627 | 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC02481 5.1e-109 tRNA (uracil-5-) -methyltransferase K03215; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | KEGG: smn:SMA_1241 8.6e-226 5,10-methylenetetrahydrofolate reductase/Homolog of homocysteine-binding domain; K00547 homocysteine S-methyltransferase; Psort location: Cytoplasmic, score: 7.50. | 0.401 |
| KXB60270.1 | RsmB | HMPREF3186_00856 | HMPREF3186_01196 | 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC02481 5.1e-109 tRNA (uracil-5-) -methyltransferase K03215; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.455 |
| KXB60270.1 | obg | HMPREF3186_00856 | HMPREF3186_00854 | 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC02481 5.1e-109 tRNA (uracil-5-) -methyltransferase K03215; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.564 |
| KXB60270.1 | pheT | HMPREF3186_00856 | HMPREF3186_01738 | 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC02481 5.1e-109 tRNA (uracil-5-) -methyltransferase K03215; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | KEGG: sha:SH1822 4.3e-199 pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain; Psort location: Cytoplasmic, score: 9.97. | 0.460 |
| MetH | KXB60270.1 | HMPREF3186_00627 | HMPREF3186_00856 | KEGG: smn:SMA_1241 8.6e-226 5,10-methylenetetrahydrofolate reductase/Homolog of homocysteine-binding domain; K00547 homocysteine S-methyltransferase; Psort location: Cytoplasmic, score: 7.50. | 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC02481 5.1e-109 tRNA (uracil-5-) -methyltransferase K03215; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.401 |
| MetH | RsmB | HMPREF3186_00627 | HMPREF3186_01196 | KEGG: smn:SMA_1241 8.6e-226 5,10-methylenetetrahydrofolate reductase/Homolog of homocysteine-binding domain; K00547 homocysteine S-methyltransferase; Psort location: Cytoplasmic, score: 7.50. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.580 |
| RsmB | KXB60270.1 | HMPREF3186_01196 | HMPREF3186_00856 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC02481 5.1e-109 tRNA (uracil-5-) -methyltransferase K03215; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.455 |
| RsmB | MetH | HMPREF3186_01196 | HMPREF3186_00627 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | KEGG: smn:SMA_1241 8.6e-226 5,10-methylenetetrahydrofolate reductase/Homolog of homocysteine-binding domain; K00547 homocysteine S-methyltransferase; Psort location: Cytoplasmic, score: 7.50. | 0.580 |
| RsmB | obg | HMPREF3186_01196 | HMPREF3186_00854 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.465 |
| RsmB | pheT | HMPREF3186_01196 | HMPREF3186_01738 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | KEGG: sha:SH1822 4.3e-199 pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain; Psort location: Cytoplasmic, score: 9.97. | 0.814 |
| obg | KXB60269.1 | HMPREF3186_00854 | HMPREF3186_00855 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | ACT domain protein; KEGG: mcl:MCCL_1281 8.9e-34 hypothetical protein; K06209 chorismate mutase; Belongs to the UPF0735 family. | 0.808 |
| obg | KXB60270.1 | HMPREF3186_00854 | HMPREF3186_00856 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC02481 5.1e-109 tRNA (uracil-5-) -methyltransferase K03215; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.564 |
| obg | RsmB | HMPREF3186_00854 | HMPREF3186_01196 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.465 |
| obg | pheT | HMPREF3186_00854 | HMPREF3186_01738 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | KEGG: sha:SH1822 4.3e-199 pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain; Psort location: Cytoplasmic, score: 9.97. | 0.469 |
| pheT | KXB60270.1 | HMPREF3186_01738 | HMPREF3186_00856 | KEGG: sha:SH1822 4.3e-199 pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain; Psort location: Cytoplasmic, score: 9.97. | 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC02481 5.1e-109 tRNA (uracil-5-) -methyltransferase K03215; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.460 |
| pheT | RsmB | HMPREF3186_01738 | HMPREF3186_01196 | KEGG: sha:SH1822 4.3e-199 pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain; Psort location: Cytoplasmic, score: 9.97. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.814 |
| pheT | obg | HMPREF3186_01738 | HMPREF3186_00854 | KEGG: sha:SH1822 4.3e-199 pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain; Psort location: Cytoplasmic, score: 9.97. | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.469 |