STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB59642.1DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. (648 aa)    
Predicted Functional Partners:
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
 
    0.974
KXB59641.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
tmcAL
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
  
     0.712
DnaC
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
  
 0.671
KXB59645.1
Hypothetical protein.
       0.591
KXB62236.1
Polysaccharide biosynthesis protein; KEGG: ssr:SALIVB_0347 4.0e-54 cystathionine gamma-synthase; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.501
polC
DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
     0.429
KXB59646.1
Signal peptide peptidase SppA; KEGG: mcl:MCCL_1382 1.0e-48 hypothetical protein; K04773 protease IV; Psort location: CytoplasmicMembrane, score: 9.51.
       0.422
KXB58082.1
YbbR-like protein; KEGG: bya:BANAU_0179 5.2e-29 ybbR; Replicase polyprotein 1ab pp1ab; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.415
EcfT_2
Cobalt transport protein; KEGG: bya:BANAU_0146 3.8e-49 ybaF; putative ABC transporter ATP-binding protein K02008; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.409
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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