STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PsaA_2ABC transporter, substrate-binding protein; KEGG: saj:SaurJH9_2430 8.6e-14 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 9.68; Belongs to the bacterial solute-binding protein 9 family. (343 aa)    
Predicted Functional Partners:
ZnuB
ABC 3 transport family protein; KEGG: apb:SAR116_2225 1.2e-22 zinc ABC transporter membrane spanning protein K09816; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.959
HmuV
KEGG: lru:HMPREF0538_21396 1.1e-40 zinc/iron ABC transporter ATP-binding protein K02074; Psort location: CytoplasmicMembrane, score: 9.51.
 
  
 0.948
MntB_2
Metal ion ABC transporter, permease protein; KEGG: pfe:PSF113_0030 4.3e-34 znuB; protein ZnuB K09816; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.886
FhuC
Putative manganese transport system ATP-binding protein MntA; KEGG: snc:HMPREF0837_11891 1.3e-80 ABC transporter ATP-binding protein K09820; Psort location: CytoplasmicMembrane, score: 8.78.
 
  
 0.833
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.566
PurL
KEGG: ipo:Ilyop_2204 0. phosphoribosylformylglycinamidine synthase K01952; Psort location: Cytoplasmic, score: 9.97.
     
 0.537
rpmB
Ribosomal protein L28; KEGG: apb:SAR116_1905 0.00042 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.511
ribA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
     
 0.406
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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