STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YmdBMacro domain protein; KEGG: noc:Noc_1830 4.0e-31 Appr-1-p processing; Psort location: Cytoplasmic, score: 7.50. (249 aa)    
Predicted Functional Partners:
KXB59698.1
Hypothetical protein; KEGG: hit:NTHI1634 4.3e-08 NAD-dependent deacetylase K01463; Psort location: Cytoplasmic, score: 7.50.
 0.972
cmk
Cytidylate kinase; KEGG: sri:SELR_19400 1.1e-49 cmk; putative cytidylate kinase K00945; Psort location: Cytoplasmic, score: 9.97.
      0.620
KXB58408.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: sst:SSUST3_0948 1.5e-230 prtS; cell envelope proteinase; K01361 lactocepin; Psort location: Cellwall, score: 10.00.
  
    0.460
PbuO
Guanine/hypoxanthine permease PbuO; KEGG: bcz:BCZK0244 4.6e-92 guanine-hypoxanthine permease; xanthine/uracil permease family protein K06901; Psort location: CytoplasmicMembrane, score: 10.00.
      0.430
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
 
   0.426
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.