STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB58339.1Phosphotransferase enzyme family protein; KEGG: fnu:FN1237 4.5e-21 choline kinase; Psort location: Cytoplasmic, score: 7.50. (272 aa)    
Predicted Functional Partners:
GtaB_1
LicC protein; KEGG: sor:SOR_1095 2.7e-103 licC; CTP:phosphocholine cytidylyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.860
KXB63484.1
Putative membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.695
KXB63581.1
LICD family protein; KEGG: snc:HMPREF0837_11182 4.2e-130 lipopolysaccharide cholinephosphotransferase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.653
KXB63359.1
Cell wall-binding repeat protein; KEGG: smb:smi_1563 2.4e-27 lytC; choline-binding protein LytC, 4-beta-N-acetylmuramidase, Cpb13; Psort location: Extracellular, score: 8.91.
  
     0.618
KXB63583.1
LICD family protein; KEGG: cls:CXIVA_25380 2.5e-42 hypothetical protein; K07271 lipopolysaccharide cholinephosphotransferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.512
YbcJ
S4 domain protein YaaA.
       0.423
recF
Putative DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
       0.419
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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