STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TopBKEGG: cbn:CbC4_2099 9.8e-186 DNA topoisomerase III; K03169 DNA topoisomerase III; Psort location: Cytoplasmic, score: 9.97. (702 aa)    
Predicted Functional Partners:
KXB59539.1
2-oxoacid:acceptor oxidoreductase, alpha subunit; KEGG: sca:Sca_0932 9.3e-142 putative pyruvate flavodoxin/ferredoxin oxidoreductase; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Psort location: Cytoplasmic, score: 7.50.
  
   0.999
leuS
leucine--tRNA ligase; KEGG: bcy:Bcer98_3415 0. leuS; leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.999
KXB61138.1
KEGG: shn:Shewana3_3590 4.7e-12 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.827
KXB59672.1
KEGG: shn:Shewana3_3590 7.0e-18 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.827
SsbB
KEGG: shn:Shewana3_3590 8.5e-08 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.827
KXB58248.1
KEGG: shn:Shewana3_3590 5.6e-09 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.827
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
  
 0.825
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.808
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.783
PcrA_2
KEGG: sdt:SPSE_0837 2.4e-173 pcrA; ATP-dependent DNA helicase PcrA K03657; Psort location: Cytoplasmic, score: 9.95.
  
 
 0.718
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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