STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GsiA_1Putative oligopeptide ABC transporter, ATP-binding protein OppF; KEGG: gth:Geoth_3050 1.3e-62 oligopeptide/dipeptide ABC transporter ATPase K10823; Psort location: CytoplasmicMembrane, score: 8.78. (297 aa)    
Predicted Functional Partners:
GsiD_1
Putative oligopeptide ABC transporter, permease protein AppC; KEGG: bmd:BMD_1704 1.1e-44 nikC; nickel import ABC transporter permease subunit NikC K15586; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.997
GsiA_2
Putative dipeptide ABC transporter, ATP-binding protein DppD; KEGG: gth:Geoth_2280 1.1e-56 oligopeptide/dipeptide ABC transporter ATPase K02031; Psort location: CytoplasmicMembrane, score: 8.78.
 
 
0.991
GsiC_1
Putative oligopeptide ABC transporter, permease protein AppB; KEGG: bmd:BMD_1703 6.0e-51 nikB; nickel import ABC transporter permease subunit NikB K15585; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.975
ecfA
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
0.935
GsiD_2
Putative oligopeptide ABC transporter, permease protein AppC; KEGG: efi:OG1RF_12367 2.6e-73 ABC superfamily ATP binding cassette transporter, ABC protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.932
LolD_2
Putative lipoprotein releasing system, ATP-binding protein; KEGG: llk:LLKF_2523 2.8e-69 yxeB; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
 
   
0.906
YusV
Putative ferrichrome ABC transporter, ATP-binding protein FhuC; KEGG: bca:BCE_4668 1.1e-58 iron ABC transporter ATP-binding protein; K02013 iron complex transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
     
0.900
GsiC_2
Putative oligopeptide ABC transporter, permease protein AppB; KEGG: bra:BRADO1094 7.4e-46 appB; oligopeptide transport system permease K02033; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.892
AppA_1
ABC transporter, substrate-binding protein, family 5; KEGG: gwc:GWCH70_0479 9.4e-46 4-phytase K02035; Psort location: Cellwall, score: 9.21.
  
 0.844
ArtQ
Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 3.7e-44 sdhA; succinate dehydrogenase flavoprotein subunit K02029; Psort location: CytoplasmicMembrane, score: 9.99.
 
    0.741
Your Current Organism:
Gemella haemolysans
NCBI taxonomy Id: 1379
Other names: ATCC 10379, CCUG 37985, CIP 101126, G. haemolysans, LMG 18984, LMG:18984, NCTC 12968, Neisseria haemolysans
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