STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001612615_01496Unannotated protein. (343 aa)    
Predicted Functional Partners:
GCA_001612615_03831
Unannotated protein.
 
   
 0.877
GCA_001612615_03826
Unannotated protein.
 
   
 0.820
GCA_001612615_03838
Unannotated protein.
 
   
 0.802
GCA_001612615_01495
Unannotated protein.
       0.783
GCA_001612615_03828
Unannotated protein.
  
   
 0.749
GCA_001612615_00902
Unannotated protein.
  
     0.747
GCA_001612615_06536
Unannotated protein.
  
     0.733
GCA_001612615_03631
Unannotated protein.
  
   
 0.731
GCA_001612615_03430
Unannotated protein.
  
     0.727
GCA_001612615_01214
Unannotated protein.
  
     0.718
Your Current Organism:
Nocardia amikacinitolerans
NCBI taxonomy Id: 1379680
Other names: N. amikacinitolerans NBRC 108937, Nocardia amikacinitolerans NBRC 108937, Nocardia amikacinitolerans W9988, Nocardia sp. W9988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.