STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001612615_06500Unannotated protein. (248 aa)    
Predicted Functional Partners:
GCA_001612615_06501
Unannotated protein.
 
 0.999
GCA_001612615_04324
Unannotated protein.
  
 0.997
GCA_001612615_04325
Unannotated protein.
  
 0.996
GCA_001612615_06502
Unannotated protein.
 
 
 
 0.994
GCA_001612615_04326
Unannotated protein.
 
 0.990
sucD
Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
 
 0.978
GCA_001612615_04449
Unannotated protein.
 
 0.977
GCA_001612615_01420
Unannotated protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.976
sucC
Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
 
 0.974
GCA_001612615_04447
Unannotated protein.
  
 0.969
Your Current Organism:
Nocardia amikacinitolerans
NCBI taxonomy Id: 1379680
Other names: N. amikacinitolerans NBRC 108937, Nocardia amikacinitolerans NBRC 108937, Nocardia amikacinitolerans W9988, Nocardia sp. W9988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.