STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carACarbamoyl phosphate synthase small subunit; RBG1_1_110; RBG1_110; Belongs to the CarA family. (372 aa)    
Predicted Functional Partners:
carB
Carbamoyl-phosphate synthase large chain; RBG1_1_111; RBG1_111; Belongs to the CarB family.
 0.999
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
 
 0.998
pyrB
Aspartate carbamoyltransferase; RBG1_1_1495; RBG1_1495; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 0.998
EQB63384.1
Ornithine carbamoyltransferase, catabolic; RBG1_1_963; RBG1_963.
 
 
 0.984
EQB62453.1
Iron-sulfur flavoprotein (NfnA); RBG1_1_32; RBG1_32.
  
 
 0.950
EQB62646.1
Hypothetical protein; RBG1_1_225; RBG1_225.
  
 
 0.950
pyrD
Hypothetical protein; Catalyzes the conversion of dihydroorotate to orotate.
  
  
 0.945
pyrF
Orotidine 5'-phosphate decarboxylase; RBG1_1_223; RBG1_223; Belongs to the OMP decarboxylase family. Type 2 subfamily.
  
  
 0.944
pyrE
Hypothetical protein; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
  
 0.943
purH
Bifunctional purine biosynthesis protein PurH; RBG1_1_972; RBG1_972.
  
 0.903
Your Current Organism:
candidate division Zixibacteria bacterium RBG1
NCBI taxonomy Id: 1379698
Other names: c. division Zixibacteria bacterium RBG-1, candidate division ZIXI bacterium RBG-1, candidate division Zixibacteria bacterium RBG-1
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