STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EQB62621.1Chromosome (Plasmid) partitioning protein ParB / Stage 0 sporulation protein J; RBG1_1_200; RBG1_200; Belongs to the ParB family. (278 aa)    
Predicted Functional Partners:
EQB62620.1
Cobyrinic acid ac-diamide synthase; RBG1_1_199; RBG1_199.
 
 0.999
EQB63062.1
Hypothetical protein; RBG1_1_641; RBG1_641.
  
 
 0.878
rsmG
Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.834
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
 0.816
EQB63287.1
DNA translocase; RBG1_1_866; RBG1_866.
  
   
 0.747
EQB64119.1
Hypothetical protein; RBG1_1_1698; RBG1_1698.
    
 0.714
EQB64071.1
Cysteine synthase; RBG1_1_1650; RBG1_1650; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.617
EQB64035.1
Cys/Met metabolism pyridoxal-phosphate-dependent protein; RBG1_1_1614; RBG1_1614.
     
 0.563
EQB64118.1
Cystathionine gamma-lyase; RBG1_1_1697; RBG1_1697.
     
 0.563
dnaA
Hypothetical protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
  
 0.559
Your Current Organism:
candidate division Zixibacteria bacterium RBG1
NCBI taxonomy Id: 1379698
Other names: c. division Zixibacteria bacterium RBG-1, candidate division ZIXI bacterium RBG-1, candidate division Zixibacteria bacterium RBG-1
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