STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaDMetal-sulfur cluster biosynthetic enzyme; RBG1_1_339; RBG1_339. (100 aa)    
Predicted Functional Partners:
EQB63161.1
Fe-S cluster assembly protein NifU; RBG1_1_740; RBG1_740.
  
    0.767
EQB62514.1
2Fe-2S ferredoxin; RBG1_1_93; RBG1_93.
  
 
 0.763
EQB63206.1
Hypothetical protein; RBG1_1_785; RBG1_785.
    
 0.748
EQB63208.1
Fatty acid oxidation complex subunit alpha; RBG1_1_787; RBG1_787.
  
 
 0.741
EQB64119.1
Hypothetical protein; RBG1_1_1698; RBG1_1698.
    
  0.682
EQB63726.1
Alternative complex III, protein B; RBG1_1_1305; RBG1_1305; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.653
EQB64071.1
Cysteine synthase; RBG1_1_1650; RBG1_1650; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
  0.652
EQB62932.1
Hypothetical protein; RBG1_1_511; RBG1_511; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.612
EQB63227.1
Enoyl-CoA hydratase/isomerase; RBG1_1_806; RBG1_806; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.612
EQB63325.1
Hypothetical protein; RBG1_1_904; RBG1_904.
  
 
 0.612
Your Current Organism:
candidate division Zixibacteria bacterium RBG1
NCBI taxonomy Id: 1379698
Other names: c. division Zixibacteria bacterium RBG-1, candidate division ZIXI bacterium RBG-1, candidate division Zixibacteria bacterium RBG-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.