STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EQB63122.1Hypothetical protein; RBG1_1_701; RBG1_701. (545 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 0.998
hutI
Hypothetical protein; RBG1_1_333; RBG1_333.
 
  
 0.956
EQB63129.1
Hypothetical protein; RBG1_1_708; RBG1_708; Belongs to the arginase family.
  
 
 0.937
EQB63668.1
Hypothetical protein; RBG1_1_1247; RBG1_1247.
 
  
 0.930
EQB64091.1
Amidohydrolase; RBG1_1_1670; RBG1_1670.
  
  
 0.813
EQB64092.1
Amidohydrolase; RBG1_1_1671; RBG1_1671.
  
  
 0.813
EQB63123.1
Transporter; RBG1_1_702; RBG1_702.
       0.671
EQB62712.1
Peptidase M20; RBG1_1_291; RBG1_291.
    
 0.668
EQB64214.1
Aromatic amino acid beta-eliminating lyase/threonine aldolase; RBG1_1_1793; RBG1_1793.
     
 0.652
hisS
Histidine-tRNA ligase; RBG1_1_703; RBG1_703.
      0.622
Your Current Organism:
candidate division Zixibacteria bacterium RBG1
NCBI taxonomy Id: 1379698
Other names: c. division Zixibacteria bacterium RBG-1, candidate division ZIXI bacterium RBG-1, candidate division Zixibacteria bacterium RBG-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.