STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EQB63135.1Hypothetical protein; RBG1_1_714; RBG1_714. (135 aa)    
Predicted Functional Partners:
mreB
Rod shape-determining protein MreB; RBG1_1_1860; RBG1_1860.
   
 
 0.983
secA
Protein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
  
   0.924
rpmC
Hypothetical protein; RBG1_1_1588; RBG1_1588; Belongs to the universal ribosomal protein uL29 family.
    
   0.921
rplV
Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
    
   0.921
rplW
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
   0.921
EQB63134.1
Short-chain dehydrogenase/reductase SDR; RBG1_1_713; RBG1_713; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.727
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
   0.649
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.615
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
   
   0.614
rpmA
Hypothetical protein; RBG1_1_444; RBG1_C00001G00444; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.594
Your Current Organism:
candidate division Zixibacteria bacterium RBG1
NCBI taxonomy Id: 1379698
Other names: c. division Zixibacteria bacterium RBG-1, candidate division ZIXI bacterium RBG-1, candidate division Zixibacteria bacterium RBG-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.