STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EQB63486.1Type 11 methyltransferase; RBG1_1_1065; RBG1_1065. (237 aa)    
Predicted Functional Partners:
EQB62588.1
dTDP-4-dehydrorhamnose 3,5-epimerase; RBG1_1_167; RBG1_167.
 
 
 0.787
EQB64082.1
Hypothetical protein; RBG1_1_1661; RBG1_1661.
   
 
 0.750
EQB63361.1
Hypothetical protein; RBG1_1_940; RBG1_940.
  
 
 0.731
EQB62629.1
Hypothetical protein; RBG1_1_208; RBG1_208.
    
 0.729
EQB64195.1
BatB protein; RBG1_1_1774; RBG1_1774.
    
 0.729
EQB64196.1
Double-transmembrane region protein; RBG1_1_1775; RBG1_1775.
    
 0.729
EQB62585.1
Hypothetical protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
 
  0.706
EQB63415.1
Hypothetical protein; RBG1_1_994; RBG1_994.
 
 
 0.697
EQB62958.1
Methyltransferase type 11; RBG1_1_537; RBG1_537.
  
 
0.689
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
   
 0.668
Your Current Organism:
candidate division Zixibacteria bacterium RBG1
NCBI taxonomy Id: 1379698
Other names: c. division Zixibacteria bacterium RBG-1, candidate division ZIXI bacterium RBG-1, candidate division Zixibacteria bacterium RBG-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.