STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EQB63954.1Nucleoside recognition protein; RBG1_1_1533; RBG1_1533. (146 aa)    
Predicted Functional Partners:
EQB63953.1
Nucleoside recognition protein; RBG1_1_1532; RBG1_1532.
 
     0.946
EQB63952.1
Hypothetical protein; RBG1_1_1531; RBG1_1531.
       0.773
argS
Arginine-tRNA ligase; RBG1_1_1534; RBG1_1534.
       0.727
EQB63951.1
Beta-lactamase fold-like protein Zn-dependent hydrolase; RBG1_1_1530; RBG1_1530.
       0.551
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.551
Your Current Organism:
candidate division Zixibacteria bacterium RBG1
NCBI taxonomy Id: 1379698
Other names: c. division Zixibacteria bacterium RBG-1, candidate division ZIXI bacterium RBG-1, candidate division Zixibacteria bacterium RBG-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.