STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EQB64171.1Hypothetical protein; RBG1_1_1750; RBG1_1750. (389 aa)    
Predicted Functional Partners:
alaS
Alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
 0.926
EQB64166.1
Hypothetical protein; RBG1_1_1745; RBG1_1745.
 
     0.879
EQB64165.1
roadblock/LC7 family protein; RBG1_1_1744; RBG1_1744.
 
     0.867
EQB64083.1
Hypothetical protein; RBG1_1_1662; RBG1_1662.
    
  0.862
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
    
 0.814
EQB63842.1
GAF sensor hybrid histidine kinase; RBG1_1_1421; RBG1_1421.
 
 
 0.796
EQB64172.1
ComEC; RBG1_1_1751; RBG1_1751.
       0.789
EQB63844.1
Hypothetical protein; RBG1_1_1423; RBG1_1423.
 
 0.782
EQB64170.1
Hypothetical protein; RBG1_1_1749; RBG1_1749.
       0.773
murJ
Hypothetical protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.773
Your Current Organism:
candidate division Zixibacteria bacterium RBG1
NCBI taxonomy Id: 1379698
Other names: c. division Zixibacteria bacterium RBG-1, candidate division ZIXI bacterium RBG-1, candidate division Zixibacteria bacterium RBG-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.