STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EQB64283.1RNA polymerase, sigma-24 subunit, ECF subfamily; RBG1_1_1862; RBG1_1862; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)    
Predicted Functional Partners:
EQB64284.1
Hypothetical protein; RBG1_1_1863; RBG1_1863.
  
 
 0.915
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.901
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.876
EQB64285.1
Hypothetical protein; RBG1_1_1864; RBG1_1864.
       0.757
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.695
EQB63047.1
Hypothetical protein; RBG1_1_626; RBG1_626.
  
 
 0.642
EQB64282.1
MATE efflux family protein; RBG1_1_1861; RBG1_1861.
     
 0.613
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
     
 0.551
rnr
Hypothetical protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.504
EQB64287.1
Response regulator; RBG1_1_1866; RBG1_1866.
       0.492
Your Current Organism:
candidate division Zixibacteria bacterium RBG1
NCBI taxonomy Id: 1379698
Other names: c. division Zixibacteria bacterium RBG-1, candidate division ZIXI bacterium RBG-1, candidate division Zixibacteria bacterium RBG-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.