STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKD55996.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)    
Predicted Functional Partners:
AKD55997.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.813
AKD58545.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.733
AKD55995.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.588
AKD54771.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.491
AKD55998.1
DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
AKD54660.1
Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
AKD54768.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.458
AKD54770.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.456
AKD53755.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
AKD55949.1
Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.430
Your Current Organism:
Spirosoma radiotolerans
NCBI taxonomy Id: 1379870
Other names: JCM 19447, KCTC 32455, S. radiotolerans, Spirosoma radiotolerans Lee et al. 2017, Spirosoma sp. DG5A, strain DG5A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.