STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000620545_01898Unannotated protein. (210 aa)    
Predicted Functional Partners:
GCA_000620545_01897
Unannotated protein.
 
     0.875
GCA_000620545_01058
Unannotated protein.
   
  
 0.759
GCA_000620545_02175
Unannotated protein.
   
    0.650
GCA_000620545_00663
Unannotated protein.
  
    0.595
GCA_000620545_04010
Unannotated protein.
    
   0.565
GCA_000620545_04029
Unannotated protein.
    
   0.565
GCA_000620545_00958
Unannotated protein.
   
    0.560
GCA_000620545_02154
Unannotated protein.
   
    0.553
GCA_000620545_02370
Unannotated protein.
   
    0.553
GCA_000620545_00101
Unannotated protein.
   
    0.482
Your Current Organism:
Intrasporangiaceae bacterium URHB0013
NCBI taxonomy Id: 1380370
Other names: I. bacterium URHB0013
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