STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000620545_04040Unannotated protein. (439 aa)    
Predicted Functional Partners:
GCA_000620545_02675
Unannotated protein.
  
 
 0.906
GCA_000620545_04023
Unannotated protein.
 
 0.794
GCA_000620545_02933
Unannotated protein.
   
 
  0.729
GCA_000620545_02674
Unannotated protein.
  
 
 0.723
GCA_000620545_00808
Unannotated protein.
  
 0.671
GCA_000620545_04041
Unannotated protein.
    
 0.660
GCA_000620545_04038
Unannotated protein.
       0.623
GCA_000620545_04031
Unannotated protein.
 
     0.618
GCA_000620545_04029
Unannotated protein.
 
  
 0.617
GCA_000620545_04036
Unannotated protein.
 
     0.615
Your Current Organism:
Intrasporangiaceae bacterium URHB0013
NCBI taxonomy Id: 1380370
Other names: I. bacterium URHB0013
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