STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000620245_00739Unannotated protein. (160 aa)    
Predicted Functional Partners:
GCA_000620245_03435
Unannotated protein.
   
 
 0.944
GCA_000620245_01736
Unannotated protein.
 
 
 
 0.939
GCA_000620245_03434
Unannotated protein.
   
 
 0.920
GCA_000620245_03465
Unannotated protein.
   
 
 0.919
GCA_000620245_00740
Unannotated protein.
       0.800
GCA_000620245_00510
Unannotated protein.
    
 0.707
GCA_000620245_05551
Unannotated protein.
   
    0.595
GCA_000620245_01746
Unannotated protein.
  
 
  0.594
GCA_000620245_00741
Unannotated protein.
       0.590
GCA_000620245_04923
Unannotated protein.
     
 0.588
Your Current Organism:
Pseudomonas sp. URHB0015
NCBI taxonomy Id: 1380376
Other names: P. sp. URHB0015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.