STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000620245_01381Unannotated protein. (466 aa)    
Predicted Functional Partners:
GCA_000620245_01690
Unannotated protein.
  
  
  0.817
GCA_000620245_04300
Unannotated protein.
  
 
 0.784
GCA_000620245_00680
Unannotated protein.
    
 0.770
GCA_000620245_04302
Unannotated protein.
  
 
 0.630
GCA_000620245_04089
Unannotated protein.
  
     0.607
GCA_000620245_01380
Unannotated protein.
       0.550
GCA_000620245_03316
Unannotated protein.
  
 0.549
GCA_000620245_05450
Unannotated protein.
   
 
 0.526
GCA_000620245_03273
Unannotated protein.
  
 
 0.496
GCA_000620245_04954
Unannotated protein.
    
  0.493
Your Current Organism:
Pseudomonas sp. URHB0015
NCBI taxonomy Id: 1380376
Other names: P. sp. URHB0015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.