STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000620225_05506Unannotated protein. (500 aa)    
Predicted Functional Partners:
GCA_000620225_05283
Unannotated protein.
   
   0.995
GCA_000620225_01458
Unannotated protein.
   
 
 0.891
GCA_000620225_01455
Unannotated protein.
   
   0.872
GCA_000620225_01454
Unannotated protein.
   
 
 0.856
GCA_000620225_04674
Unannotated protein.
   
 0.830
GCA_000620225_01459
Unannotated protein.
    
   0.827
GCA_000620225_05438
Unannotated protein.
   
 0.820
GCA_000620225_01453
Unannotated protein.
   
   0.801
GCA_000620225_01457
Unannotated protein.
   
   0.793
GCA_000620225_01452
Unannotated protein.
    
   0.783
Your Current Organism:
Variovorax sp. URHB0020
NCBI taxonomy Id: 1380385
Other names: V. sp. URHB0020
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.