STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000739555_02230Unannotated protein. (113 aa)    
Predicted Functional Partners:
GCA_000739555_00688
Unannotated protein.
  
     0.621
GCA_000739555_02231
Unannotated protein.
 
     0.620
GCA_000739555_00006
Unannotated protein.
   
 
 0.587
GCA_000739555_02736
Unannotated protein.
   
 
 0.587
GCA_000739555_02202
Unannotated protein.
 
   
 0.569
GCA_000739555_00071
Unannotated protein.
 
  
 0.561
GCA_000739555_03117
Unannotated protein.
 
  
 0.561
GCA_000739555_00839
Unannotated protein.
  
  
  0.560
GCA_000739555_01359
Unannotated protein.
 
  
 0.559
GCA_000739555_02566
Unannotated protein.
  
  
  0.545
Your Current Organism:
Halolamina rubra
NCBI taxonomy Id: 1380430
Other names: CECT 8421, H. rubra, Halolamina rubra Cha et al. 2014, Halolamina sp. CBA1107, Halolamina sp. CBA1108, JCM 19436, strain CBA1107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.