STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000739555_02389Unannotated protein. (329 aa)    
Predicted Functional Partners:
GCA_000739555_02390
Unannotated protein.
       0.547
GCA_000739555_02391
Unannotated protein.
       0.547
GCA_000739555_00764
Unannotated protein.
  
     0.469
GCA_000739555_00127
Unannotated protein.
  
     0.462
GCA_000739555_01168
Unannotated protein.
  
     0.458
GCA_000739555_02164
Unannotated protein.
  
     0.448
GCA_000739555_02388
Unannotated protein.
 
    
0.441
GCA_000739555_02387
Unannotated protein.
       0.434
GCA_000739555_01689
Unannotated protein.
  
     0.427
GCA_000739555_03057
Unannotated protein.
  
     0.422
Your Current Organism:
Halolamina rubra
NCBI taxonomy Id: 1380430
Other names: CECT 8421, H. rubra, Halolamina rubra Cha et al. 2014, Halolamina sp. CBA1107, Halolamina sp. CBA1108, JCM 19436, strain CBA1107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.