STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000739555_02720Unannotated protein. (473 aa)    
Predicted Functional Partners:
GCA_000739555_01472
Unannotated protein.
 
 
 0.856
GCA_000739555_01603
Unannotated protein.
    
 0.828
GCA_000739555_02939
Unannotated protein.
  
 0.807
GCA_000739555_01295
Unannotated protein.
  
 
 0.735
GCA_000739555_01635
Unannotated protein.
  
 
 0.735
GCA_000739555_01371
Unannotated protein.
  
 
 0.729
GCA_000739555_02779
Unannotated protein.
  
 0.726
GCA_000739555_02721
Unannotated protein.
     
 0.710
GCA_000739555_02769
Unannotated protein.
 
  
 0.684
GCA_000739555_02041
Unannotated protein.
    
 0.667
Your Current Organism:
Halolamina rubra
NCBI taxonomy Id: 1380430
Other names: CECT 8421, H. rubra, Halolamina rubra Cha et al. 2014, Halolamina sp. CBA1107, Halolamina sp. CBA1108, JCM 19436, strain CBA1107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.