STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VFPPC_14154Ubiquitin interaction domain-containing protein. (391 aa)    
Predicted Functional Partners:
VFPPC_02996
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]
    
 
 0.872
VFPPC_02672
ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.
    
 0.708
VFPPC_04794
DNA repair protein RAD1.
   
 
 0.704
VFPPC_03581
DSB repair complex subunit Ku70.
     
 0.696
VFPPC_04595
DNA lyase.
   
 
 0.624
VFPPC_00671
DNA repair protein Mus81.
   
 
 0.618
VFPPC_16474
Aprataxin-like protein.
    
 
 0.611
VFPPC_03302
Bifunctional polynucleotide phosphatase/kinase.
    
 
 0.609
VFPPC_11706
Ubiquitin/metalloprotease fusion protein.
    
 
 0.552
VFPPC_00623
Wlm domain-containing protein.
    
 
 0.552
Your Current Organism:
Pochonia chlamydosporia 170
NCBI taxonomy Id: 1380566
Other names: Metacordyceps chlamydosporia 170, P. chlamydosporia 170
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