Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
CDS55691.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (296 aa)    
Predicted Functional Partners:
arcB
Hybrid sensory histidine kinase in two-component regulatory system with ArcA; Function of homologous gene experimentally demonstrated in an other organism; regulator.
   
 
 0.957
CDS56363.1
Hypothetical protein; No homology to any previously reported sequences.
     
 0.957
CDS56439.1
Extracellular serine protease (fragment).
  
 
 0.946
CDS56440.1
Extracellular serine protease (fragment).
  
 
 0.946
CDS56256.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.941
ydiJ
Putative conserved FAD-linked oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.934
pvpS
Pvp sensor.
   
 
 0.929
ompA
Fragment of putative transposase (part 3); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.922
CDS57571.1
Hypothetical protein; No homology to any previously reported sequences.
 
 
 0.919
lepB
Leader peptidase (signal peptidase I); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the peptidase S26 family.
  
  
 0.916
Your Current Organism:
Serratia symbiotica
NCBI taxonomy Id: 138074
Other names: Candidatus Serratia symbiotica, DSM 23270, LMG 25624, LMG:25624, S. symbiotica, Serratia symbiotica Sabri et al. 2011, secondary symbiont type-R of Acyrthosiphon pisum, secondary symbiont type-R of Uroleucon caligatum, strain CWBI-2.3
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