STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDS56121.1Xenobiotic-transporting ATPase. (599 aa)    
Predicted Functional Partners:
CDS56120.1
Inner membrane ABC-transporter YbtQ.
 
 
  
0.983
CDS57572.1
Putative polyketide synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.957
pstB
Phosphate transporter subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
  
0.953
pvpS
Pvp sensor.
 
 
 0.952
macB
Fused macrolide transporter subunits of ABC superfamily: ATP-binding component; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
0.950
CDS55859.1
Putative transport protein (ABC superfamily,membrane); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.949
CDS56764.1
Putative transporter subunit: permease component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.949
CDS56765.1
ABC-2 type transporter.
  
 
 0.949
queF
NADPH-dependent 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.944
CDS57394.1
Putative ABC transporter permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.941
Your Current Organism:
Serratia symbiotica
NCBI taxonomy Id: 138074
Other names: Candidatus Serratia symbiotica, DSM 23270, LMG 25624, LMG:25624, S. symbiotica, Serratia symbiotica Sabri et al. 2011, secondary symbiont type-R of Acyrthosiphon pisum, secondary symbiont type-R of Uroleucon caligatum, strain CWBI-2.3
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