Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| fruA | greB | SYMBAF_30120 | SYMBAF_110112 | Fused fructose-specific PTS enzymes: IIBcomponent; Function of homologous gene experimentally demonstrated in an other organism; transporter. | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.501 |
| fruA | hepA | SYMBAF_30120 | SYMBAF_10191 | Fused fructose-specific PTS enzymes: IIBcomponent; Function of homologous gene experimentally demonstrated in an other organism; transporter. | RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor); Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.422 |
| fruA | lepB | SYMBAF_30120 | SYMBAF_80130 | Fused fructose-specific PTS enzymes: IIBcomponent; Function of homologous gene experimentally demonstrated in an other organism; transporter. | Leader peptidase (signal peptidase I); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the peptidase S26 family. | 0.816 |
| fruA | metG | SYMBAF_30120 | SYMBAF_20241 | Fused fructose-specific PTS enzymes: IIBcomponent; Function of homologous gene experimentally demonstrated in an other organism; transporter. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.822 |
| fruA | metL | SYMBAF_30120 | SYMBAF_120019 | Fused fructose-specific PTS enzymes: IIBcomponent; Function of homologous gene experimentally demonstrated in an other organism; transporter. | Fused aspartokinase II; Function of homologous gene experimentally demonstrated in an other organism; enzyme; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.610 |
| fruA | pheT | SYMBAF_30120 | SYMBAF_50309 | Fused fructose-specific PTS enzymes: IIBcomponent; Function of homologous gene experimentally demonstrated in an other organism; transporter. | Phenylalanine tRNA synthetase, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.627 |
| fruA | sseB | SYMBAF_30120 | SYMBAF_80060 | Fused fructose-specific PTS enzymes: IIBcomponent; Function of homologous gene experimentally demonstrated in an other organism; transporter. | Rhodanase-like enzyme, sulfur transfer from thiosulfate; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.598 |
| fruA | thrA | SYMBAF_30120 | SYMBAF_10085 | Fused fructose-specific PTS enzymes: IIBcomponent; Function of homologous gene experimentally demonstrated in an other organism; transporter. | Fused aspartokinase I; Function of homologous gene experimentally demonstrated in an other organism; enzyme; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.610 |
| fruA | yhgF | SYMBAF_30120 | SYMBAF_110113 | Fused fructose-specific PTS enzymes: IIBcomponent; Function of homologous gene experimentally demonstrated in an other organism; transporter. | Transcriptional accessory protein; Function of strongly homologous gene; factor. | 0.933 |
| greB | fruA | SYMBAF_110112 | SYMBAF_30120 | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Fused fructose-specific PTS enzymes: IIBcomponent; Function of homologous gene experimentally demonstrated in an other organism; transporter. | 0.501 |
| greB | hepA | SYMBAF_110112 | SYMBAF_10191 | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor); Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.902 |
| greB | metG | SYMBAF_110112 | SYMBAF_20241 | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.950 |
| greB | metL | SYMBAF_110112 | SYMBAF_120019 | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Fused aspartokinase II; Function of homologous gene experimentally demonstrated in an other organism; enzyme; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.504 |
| greB | pheT | SYMBAF_110112 | SYMBAF_50309 | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Phenylalanine tRNA synthetase, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.971 |
| greB | rpoA | SYMBAF_110112 | SYMBAF_110014 | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.964 |
| greB | sseB | SYMBAF_110112 | SYMBAF_80060 | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Rhodanase-like enzyme, sulfur transfer from thiosulfate; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.784 |
| greB | thrA | SYMBAF_110112 | SYMBAF_10085 | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Fused aspartokinase I; Function of homologous gene experimentally demonstrated in an other organism; enzyme; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.504 |
| greB | yhgF | SYMBAF_110112 | SYMBAF_110113 | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Transcriptional accessory protein; Function of strongly homologous gene; factor. | 0.945 |
| hepA | fruA | SYMBAF_10191 | SYMBAF_30120 | RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor); Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | Fused fructose-specific PTS enzymes: IIBcomponent; Function of homologous gene experimentally demonstrated in an other organism; transporter. | 0.422 |
| hepA | greB | SYMBAF_10191 | SYMBAF_110112 | RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor); Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.902 |
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