STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDS56589.1Plasmid maintenance system killer. (92 aa)    
Predicted Functional Partners:
CDS56588.1
HigA family addiction module antidote protein.
 
 
 
 0.999
gcvP
Glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
       0.913
ychF
Putative GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.860
CDS55682.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.853
CDS56679.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.849
CDS56948.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.849
CDS56928.1
Putative RelE-like toxin protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.831
CDS57978.1
Hypothetical protein; No homology to any previously reported sequences.
     
 0.825
CDS56680.1
Putative addiction module toxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.811
CDS58981.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.807
Your Current Organism:
Serratia symbiotica
NCBI taxonomy Id: 138074
Other names: Candidatus Serratia symbiotica, DSM 23270, LMG 25624, LMG:25624, S. symbiotica, Serratia symbiotica Sabri et al. 2011, secondary symbiont type-R of Acyrthosiphon pisum, secondary symbiont type-R of Uroleucon caligatum, strain CWBI-2.3
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