STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDS56944.1Peptidase, S8/S53 family. (733 aa)    
Predicted Functional Partners:
CDS56945.1
AAA ATPase central domain protein.
 
  
 0.994
CDS55691.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 0.944
CDS55595.1
Hypothetical protein; No homology to any previously reported sequences.
  
 0.944
CDS55596.1
Hypothetical protein; No homology to any previously reported sequences.
  
 0.944
CDS57355.1
Putative invasin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.944
CDS57440.1
Invasin; Function of homologous gene experimentally demonstrated in an other organism; factor.
  
 0.944
CDS57786.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 0.944
CDS57975.1
Putative invasin (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.944
ydgD
Putative exported metallopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.943
amiB
Putative N-acetylmuramoyl-l-alanine amidase II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.942
Your Current Organism:
Serratia symbiotica
NCBI taxonomy Id: 138074
Other names: Candidatus Serratia symbiotica, DSM 23270, LMG 25624, LMG:25624, S. symbiotica, Serratia symbiotica Sabri et al. 2011, secondary symbiont type-R of Acyrthosiphon pisum, secondary symbiont type-R of Uroleucon caligatum, strain CWBI-2.3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.