STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfcS-3Putative periplasmic pilus exported chaperone; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (253 aa)    
Predicted Functional Partners:
CDS57105.1
Hypothetical protein; No homology to any previously reported sequences.
 
 
 0.990
CDS56183.1
Fimbrial protein domain-containing protein.
 
 
 0.982
fimA
Type-1 fimbrial protein subunit precursor; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
 
 0.982
smfA
Fimbria A protein.
 
 
 0.981
smfA-2
Fimbria A protein.
 
 
 0.981
CDS56180.1
Fimbrial protein domain-containing protein.
 
 
 0.981
CDS56185.1
Fimbrial protein.
 
 
 0.981
smfA-3
Fimbria A protein.
 
 
 0.981
smfA-4
Fimbria A protein.
 
 
 0.981
yfcU
Putative outer membrane usher protein YfcU; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.979
Your Current Organism:
Serratia symbiotica
NCBI taxonomy Id: 138074
Other names: Candidatus Serratia symbiotica, DSM 23270, LMG 25624, LMG:25624, S. symbiotica, Serratia symbiotica Sabri et al. 2011, secondary symbiont type-R of Acyrthosiphon pisum, secondary symbiont type-R of Uroleucon caligatum, strain CWBI-2.3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.