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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDS57117.1Transposase (fragment). (183 aa)    
Predicted Functional Partners:
CDS56591.1
Transposase (fragment).
  
     0.773
insA
IS1 repressor protein InsA; Function of homologous gene experimentally demonstrated in an other organism; extrachromosomal origin.
       0.693
insO-10
Fragment of putative cyclic diguanylate phosphodiesterase (part 1); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
       0.612
CDS58118.1
Antibiotic biosynthesis monooxygenase (fragment).
       0.603
insB
Insertion element iso-IS1n protein InsB.
     
 0.599
copA
Copper transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.586
SYMBAF_10027
Fragment of putative transposase (part 1); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
   
 0.572
CDS56948.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.566
CDS57417.1
Hypothetical protein; No homology to any previously reported sequences.
     
 0.545
SYMBAF_10217
Fragment of conjugal transfer protein (part 2); Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.524
Your Current Organism:
Serratia symbiotica
NCBI taxonomy Id: 138074
Other names: Candidatus Serratia symbiotica, DSM 23270, LMG 25624, LMG:25624, S. symbiotica, Serratia symbiotica Sabri et al. 2011, secondary symbiont type-R of Acyrthosiphon pisum, secondary symbiont type-R of Uroleucon caligatum, strain CWBI-2.3
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