Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDS57151.1Hypothetical protein; No homology to any previously reported sequences. (91 aa)    
Predicted Functional Partners:
CDS57153.1
Putative phage portal protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.952
CDS57154.1
Peptidase family S49 domain-containing protein.
  
    0.911
CDS57152.1
Putative phage head-to-tail joining protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.909
CDS57848.1
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.903
I
Tail protein I.
  
  
 0.893
I-2
Tail protein I.
  
  
 0.893
I-3
Tail protein I.
  
  
 0.893
CDS56404.1
Major tail tube protein.
  
  
 0.887
CDS56890.1
Major tail tube protein.
  
  
 0.887
FII
Major tail tube protein.
  
  
 0.887
Your Current Organism:
Serratia symbiotica
NCBI taxonomy Id: 138074
Other names: Candidatus Serratia symbiotica, DSM 23270, LMG 25624, LMG:25624, S. symbiotica, Serratia symbiotica Sabri et al. 2011, secondary symbiont type-R of Acyrthosiphon pisum, secondary symbiont type-R of Uroleucon caligatum, strain CWBI-2.3
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