Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CDS57154.1Peptidase family S49 domain-containing protein. (286 aa)    
Predicted Functional Partners:
CDS57153.1
Putative phage portal protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.991
CDS57158.1
Putative phage capid protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.966
CDS55664.1
Putative phage portal protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.965
CDS55666.1
Putative phage terminase large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.949
CDS57813.1
Putative phage terminase large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.949
SYMBAF_20008
Fragment of putative prophage exported protein (part 2); Gene remnant; putative enzyme.
 
  
 0.943
polA
Fused DNA polymerase I 5'->3' exonuclease; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.928
CDS55660.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.921
amiB
Putative N-acetylmuramoyl-l-alanine amidase II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.920
trpC
Fused indole-3-glycerolphosphate synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the TrpC family.
     
 0.920
Your Current Organism:
Serratia symbiotica
NCBI taxonomy Id: 138074
Other names: Candidatus Serratia symbiotica, DSM 23270, LMG 25624, LMG:25624, S. symbiotica, Serratia symbiotica Sabri et al. 2011, secondary symbiont type-R of Acyrthosiphon pisum, secondary symbiont type-R of Uroleucon caligatum, strain CWBI-2.3
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