STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDS57394.1Putative ABC transporter permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (264 aa)    
Predicted Functional Partners:
CDS57395.1
Putative ABC transporter ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.998
CDS57396.1
Hypothetical protein; No homology to any previously reported sequences.
 
  
 0.988
cpsB
Mannose-1-phosphate guanyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.985
CDS57400.1
Putative glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.985
CDS57572.1
Putative polyketide synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.985
CDS57397.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.983
CDS57571.1
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.983
CDS57401.1
Putative glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.982
CDS57399.1
NAD-dependent epimerase/dehydratase.
 
  
 0.980
gmd
GDP-D-mannose dehydratase, NAD(P)-binding; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.976
Your Current Organism:
Serratia symbiotica
NCBI taxonomy Id: 138074
Other names: Candidatus Serratia symbiotica, DSM 23270, LMG 25624, LMG:25624, S. symbiotica, Serratia symbiotica Sabri et al. 2011, secondary symbiont type-R of Acyrthosiphon pisum, secondary symbiont type-R of Uroleucon caligatum, strain CWBI-2.3
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