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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDS58512.1Hypothetical protein; No homology to any previously reported sequences. (149 aa)    
Predicted Functional Partners:
entB
Isochorismatase; Doubtful CDS; enzyme.
  
 
 0.999
CDS56592.1
Hypothetical protein; No homology to any previously reported sequences.
 
 
 0.999
CDS56593.1
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.999
CDS56594.1
Phenyloxazoline synthase MbtB (fragment).
 
 0.999
entB-2
Isochorismatase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.999
mbtH
MbtH domain-containing protein.
 
 0.999
CDS57569.1
Putative Thioesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.999
CDS57571.1
Hypothetical protein; No homology to any previously reported sequences.
 0.999
CDS57572.1
Putative polyketide synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.999
SYMBAF_310001
Fragment of putative non-ribosomal peptide synthetase modules; Contig: SYMBAF_Contig_31.
 
 0.999
Your Current Organism:
Serratia symbiotica
NCBI taxonomy Id: 138074
Other names: Candidatus Serratia symbiotica, DSM 23270, LMG 25624, LMG:25624, S. symbiotica, Serratia symbiotica Sabri et al. 2011, secondary symbiont type-R of Acyrthosiphon pisum, secondary symbiont type-R of Uroleucon caligatum, strain CWBI-2.3
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