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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDS58693.1Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (111 aa)    
Predicted Functional Partners:
CDS58692.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.996
CDS57131.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.960
CDS58449.1
Toxin-antitoxin toxin family.
 
  
 0.861
CDS57612.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.834
CDS56588.1
HigA family addiction module antidote protein.
 
   
 0.826
purE
N5-carboxyaminoimidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.780
purK
N5-carboxyaminoimidazole ribonucleotide synthase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
       0.779
rpoZ
RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
       0.765
CDS57132.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.717
CDS56261.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.669
Your Current Organism:
Serratia symbiotica
NCBI taxonomy Id: 138074
Other names: Candidatus Serratia symbiotica, DSM 23270, LMG 25624, LMG:25624, S. symbiotica, Serratia symbiotica Sabri et al. 2011, secondary symbiont type-R of Acyrthosiphon pisum, secondary symbiont type-R of Uroleucon caligatum, strain CWBI-2.3
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