STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH50_07250Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)    
Predicted Functional Partners:
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.931
CH50_02060
precorrin-3B C17-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
CH50_15890
Spore gernimation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
CH50_15130
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.770
CH50_04595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
CH50_08005
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.759
CH50_10510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.758
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
    0.748
CH50_11380
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
CH50_03160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.735
Your Current Organism:
Paenibacillus darwinianus
NCBI taxonomy Id: 1380763
Other names: DSM 27245, ICMP 19883, ICMP:19883, P. darwinianus, Paenibacillus darwinianus Dsouza et al. 2014, Paenibacillus sp. Br, Paenibacillus sp. CE1, Paenibacillus sp. MB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.