STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH50_08610Potassium uptake system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)    
Predicted Functional Partners:
CH50_08615
ATP synthase subunit J; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
CH50_13270
Molybdopterin converting factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.704
CH50_08620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.670
CH50_01080
16S rRNA methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.669
cinA
Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.
    
 0.655
CH50_07050
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.506
CH50_13660
HemD protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.471
CH50_06030
Subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.440
CH50_09375
uroporphyrinogen-III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.436
Your Current Organism:
Paenibacillus darwinianus
NCBI taxonomy Id: 1380763
Other names: DSM 27245, ICMP 19883, ICMP:19883, P. darwinianus, Paenibacillus darwinianus Dsouza et al. 2014, Paenibacillus sp. Br, Paenibacillus sp. CE1, Paenibacillus sp. MB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.