STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH50_11775Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (420 aa)    
Predicted Functional Partners:
sigI-2
RNA polymerase sigma factor SigI; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
 
 
 0.992
sigI
RNA polymerase sigma factor SigI; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
 
 
 0.966
CH50_11785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.728
CH50_01180
Membrane protein; Probably functions as a manganese efflux pump.
  
     0.557
CH50_12675
Stage III sporulation protein AB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.518
CH50_13715
Folylpolyglutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the folylpolyglutamate synthase family.
  
    0.495
CH50_11770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.474
CH50_11765
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.452
CH50_05140
Hydrolase Nlp/P60; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.432
CH50_12550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.427
Your Current Organism:
Paenibacillus darwinianus
NCBI taxonomy Id: 1380763
Other names: DSM 27245, ICMP 19883, ICMP:19883, P. darwinianus, Paenibacillus darwinianus Dsouza et al. 2014, Paenibacillus sp. Br, Paenibacillus sp. CE1, Paenibacillus sp. MB1
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