STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH50_14885PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)    
Predicted Functional Partners:
CH50_07050
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.998
CH50_11895
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.992
CH50_14880
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.975
CH50_08115
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.950
CH50_14120
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.925
CH50_08060
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.913
CH50_08070
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.903
CH50_07030
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.901
CH50_03560
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.878
CH50_02160
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.867
Your Current Organism:
Paenibacillus darwinianus
NCBI taxonomy Id: 1380763
Other names: DSM 27245, ICMP 19883, ICMP:19883, P. darwinianus, Paenibacillus darwinianus Dsouza et al. 2014, Paenibacillus sp. Br, Paenibacillus sp. CE1, Paenibacillus sp. MB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.