Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EST30865.1 | EST34753.1 | N566_21000 | N566_18150 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.994 |
| EST30865.1 | atpA | N566_21000 | N566_22310 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.879 |
| EST30865.1 | atpC | N566_21000 | N566_22325 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | F0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.922 |
| EST30865.1 | atpG | N566_21000 | N566_22315 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | F0F1 ATP synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.877 |
| EST30865.1 | atpH | N566_21000 | N566_22305 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | F0F1 ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.875 |
| EST30865.1 | nuoC | N566_21000 | N566_17895 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | NADH dehydrogenase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | 0.999 |
| EST34753.1 | EST30865.1 | N566_18150 | N566_21000 | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.994 |
| EST34753.1 | atpA | N566_18150 | N566_22310 | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.874 |
| EST34753.1 | atpB | N566_18150 | N566_22290 | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | F0F1 ATP synthase subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. | 0.648 |
| EST34753.1 | atpC | N566_18150 | N566_22325 | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | F0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.897 |
| EST34753.1 | atpD | N566_18150 | N566_22320 | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.865 |
| EST34753.1 | atpE | N566_18150 | N566_22295 | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.837 |
| EST34753.1 | atpF | N566_18150 | N566_22300 | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.880 |
| EST34753.1 | atpG | N566_18150 | N566_22315 | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | F0F1 ATP synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.879 |
| EST34753.1 | atpH | N566_18150 | N566_22305 | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | F0F1 ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.880 |
| EST34753.1 | nuoC | N566_18150 | N566_17895 | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | NADH dehydrogenase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | 0.988 |
| atpA | EST30865.1 | N566_22310 | N566_21000 | F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.879 |
| atpA | EST34753.1 | N566_22310 | N566_18150 | F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.874 |
| atpA | atpB | N566_22310 | N566_22290 | F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | F0F1 ATP synthase subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. | 0.999 |
| atpA | atpC | N566_22310 | N566_22325 | F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | F0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.999 |
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