STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN56509.1Metallo-beta-lactamase domain protein. (419 aa)    
Predicted Functional Partners:
KRN55886.1
Hypothetical protein.
 
  
 0.751
KRN56507.1
Hypothetical protein.
    
  0.714
KRN56508.1
Hypothetical protein.
       0.561
msrB
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.555
KRN55743.1
Rubrerythrin.
 
  
 0.536
KRN55409.1
Pyruvate ferredoxin flavodoxin oxidoreductase.
  
  
 0.501
KRN56094.1
L-glutamine synthetase.
    
 0.472
KRN55465.1
Oxidoreductase FAD NAD(P)-binding domain-containing protein.
  
     0.471
KRN56505.1
Uracil DNA glycosylase superfamily protein.
       0.410
KRN56506.1
MATE efflux family protein.
       0.410
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.