STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN56087.1Hypothetical protein. (171 aa)    
Predicted Functional Partners:
KRN56086.1
Hypothetical protein.
       0.782
KRN56088.1
Hypothetical protein.
       0.773
KRN56085.1
Type II secretion system F domain protein.
       0.705
KRN56084.1
Type II secretion system protein.
       0.700
KRN56089.1
Hypothetical protein.
       0.564
KRN56090.1
Hypothetical protein.
       0.564
KRN56091.1
Hypothetical protein.
       0.560
KRN56092.1
Hypothetical protein.
       0.480
KRN56082.1
Chromosome partitioning ATPase-like protein.
       0.479
KRN56083.1
Type II IV secretion system protein E.
       0.472
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.